=shell
  ln -sf $base_library ft89f001
  ln -sf $perturbation_factors ft87f001
end
=clarolplus
  in=89
  out=88
  var=87
  isvar=10
  bond=yes
  sam=$sample_number
end
=shell
  mv ft88f001 perturbed_library
  unlink ft87f001
  unlink ft89f001
  mv ft10f001 crawdadPerturbMGLib
end

=shell
    cp perturbed_library $output
end